run_metadata: 71628
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71628 | SRR21849082 | SRX17837648 | SRS15359799 | SRP401744 | PRJNA888821 | The RNA binding protein CSDE1 promotes hematopoietic stem and progenitor cell generation via translational control of Wnt signaling | PRJNA888821 | Other | We identified RBP as an important post transcriptional regulator of HSPC generation and elucidated the underlying molecular mechanisms. The study also provides helpful insights into designing novel strategies for HSPC generation in vitro. | 33 hpf Zebrafish trunk region Bulk RNA seq.Sibling2 | Zebrafish 33 hpf.Bulk RNA seq.Sibling2 | breed:Zebrafish|age:33 hpf|dev stage:HSPC generation|sex:pooled male and female|tissue:endothelial cells|treatment:4|BioSampleModel:Model organism or animal | 33 hpf Zebrafish trunk region Bulk RNA seq.Sibling2 | Sibling2 | Sibling2 | RNA Seq | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP401744 | Sibling2_1.fq.gz Sibling2_2.fq.gz | fastq fastq | 8355719700.0 | 27852399.0 | Sibling2 1.fq.gz | 0:150 1:150 | A:2334078708;C:1842634378;G:1847518409;T:2331414647;N:73558 | 150 | 150 | 2334078708 | 1842634378 | 1847518409 | 2331414647 | 73558 | SRX17837648 | SRS15359799 | SRA1516844 | Institute of Hematology & Blood Diseases Hospital|State Key Laboratory of Experimental Hematology | Institute of Hematology & Blood Diseases Hospital | 2 | 0.92166 | 0.92002 | 0.15953 | 0.15792 | 0.75162 | 0.75116 | 0.51255 | 0.54267 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-10-09 | Pharyngula | Embryo | Endothelium | Cardiovascular System |