run_metadata: 71596
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71596 | SRR21773957 | SRX17768894 | SRS15295757 | SRP400510 | PRJNA885753 | Danio rerio Raw sequence reads | PRJNA885753 | Whole Genome Sequencing | normal Transcriptome sequencing of zebrafish | DMSO 1 | strain:AB|breed:fish|age:96 hpf|sex:not applicable|tissue:larvae|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal | RNA seq of zrbrafish | DMSO 1 | DMSO 1 | NORMAL RNA SEQ OF zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP400510 | L1EFH311742--MJC_1.R1.raw.fastq.gz | fastq | 3606182453.0 | 23882003.0 | L1EFH311742 MJC 1.R1.raw.fastq.gz | 0:151 1:0 | A:958579858;C:844483137;G:861497670;T:941546853;N:74935 | 151 | 0 | 958579858 | 844483137 | 861497670 | 941546853 | 74935 | SRX17768894 | SRS15295757 | SRA1510923 | Jiangxi Maternal and Child Health Hospital|Oncology Department | Jiangxi Maternal and Child Health Hospital | 1 | 0.94042 | 0.08934 | 0.68396 | 0.47261 | 151 | B | usable mapping rate | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-10-01 | Larval | Larval | Undetermined | Undetermined |