run_metadata: 71553
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71553 | SRR21700251 | SRX17697770 | SRS15228557 | SRP399479 | PRJNA884084 | RNA Seq data of gmfg morphants and their control siblings | PRJNA884084 | Other | To more specifically explore the underlying mechanism by which gmfg regulates HSPC initiation we performed RNA sequencing RNA Seq with the dissected trunk and tail from 26 hpf gmfg morphants and their control siblings. | biological replicate 2 | ctl 2 | strain:not applicable|isolate:not applicable|dev stage:26 hpf|sex:not applicable|tissue:the dissected trunk and tail|collection date:2021 02 26|geo loc name:China:Shenzhen Guangdong|sample type:ctl2|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | ctl2 20210210 | ctl2 20210210 | RNA seq of Danio rerio in different conditions | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | SINGLE | BGISEQ | BGISEQ-500 | SRP399479 | ctl_2_1.fq.gz | fastq | 1193941900.0 | 23878838.0 | ctl 2 1.fq.gz | 0:50 1:0 | A:315521033;C:273947671;G:281554279;T:322918917;N:0 | 50 | 0 | 315521033 | 273947671 | 281554279 | 322918917 | 0 | SRX17697770 | SRS15228557 | SRA1506658 | the First Affiliated Hospital, School of Medicine, Zhejiang University|BoneMarrow Transplantation Center | the First Affiliated Hospital, School of Medicine, Zhejiang University | 1 | 0.94073 | 0.08514 | 0.70281 | 0.4767 | 50 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-09-25 | Pharyngula | Embryo | Multi-tissue | Multi-system |