run_metadata: 71548
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71548 | SRR21784855 | SRX17779289 | SRS15305444 | SRP400746 | PRJNA883515 | Danio rerio Transcriptome or Gene expression | PRJNA883515 | Other | Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus Rhizoma dioscoreae Lycium chinense and Rehmannia glutinosa Libosch. Previously CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study we used zebrafish model to observe whether CACF have anti cancer effect or not. | Model organism or animal sample from Danio rerio Normal diet 2 1 | CD36 normal diet 2 1 | ecotype:Taiwan ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal | RNA seq of CD36 normal diet fish 2 1 | C15D 12 2 1 | C15D 12 2 1 | the zebrafish larvae fed with normal diet from 5dpf to 15 dpf and fast for two days then sacrificed to extract the total RNA | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiScanSQ | SRP400746 | C15D_12_2_1_paired C15D_12_2_2_paired | fastq fastq | 4709835299.0 | 15889935.0 | C15D 12 2 1 paired | 0:148.38 1:148.02 | A:1276830997;C:1066019825;G:1064609195;T:1302325802;N:49480 | 148 | 148 | 1276830997 | 1066019825 | 1064609195 | 1302325802 | 49480 | SRX17779289 | SRS15305444 | SRA1511182 | National Health Research Institutes|Institute of Molecular and Genomic Medicine | National Health Research Institutes | 2 | 0.92935 | 0.9298 | 0.13602 | 0.1343 | 0.70747 | 0.70788 | 0.50602 | 0.50503 | 151 | 151 | B | B | biological fallback assumption | illumina | early_illumina | unknown | other | unknown | bulk | unknown | unknown | Taiwan | 2022-10-03 | Larval | Larval | Whole Organism | All anatomical structures |