run_metadata: 71546
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71546 | SRR21784853 | SRX17779291 | SRS15305446 | SRP400746 | PRJNA883515 | Danio rerio Transcriptome or Gene expression | PRJNA883515 | Other | Carassius auratus complex formula CACF is a combination prescription of traditional Chinese medicine composed of extracts from C. auratus Rhizoma dioscoreae Lycium chinense and Rehmannia glutinosa Libosch. Previously CACF has been proven the anti diabetes effect on HFD treatment mice model. In this study we used zebrafish model to observe whether CACF have anti cancer effect or not. | Model organism or animal sample from Danio rerio CACF 2 1 | CD36 CACF 2 1 | ecotype:Taiwan ROC|age:15 dpf|dev stage:larvae|sex:not determined|tissue:whole fish|BioSampleModel:Model organism or animal | RNA seq of CD36 with CACF treatment fish 1 1 | T15D 24 C 2 1 | T15D 24 C 2 1 | the zebrafish larvae fed with hight fat diet and treat with CACF everyday from 5dpf to 15 dpf and fast for two days then sacrificed to extract the total RNA | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiScanSQ | SRP400746 | T15D_24_C_2_1_paired T15D_24_C_2_2_paired | fastq fastq | 3981831028.0 | 13417594.0 | T15D 24 C 2 1 paired | 0:148.59 1:148.17 | A:1093541197;C:886197071;G:886629442;T:1115421463;N:41855 | 148 | 148 | 1093541197 | 886197071 | 886629442 | 1115421463 | 41855 | SRX17779291 | SRS15305446 | SRA1511182 | National Health Research Institutes|Institute of Molecular and Genomic Medicine | National Health Research Institutes | 2 | 0.94081 | 0.94152 | 0.10901 | 0.10793 | 0.70964 | 0.70855 | 0.602 | 0.60183 | 151 | 151 | B | B | biological fallback assumption | illumina | early_illumina | unknown | other | unknown | bulk | unknown | unknown | Taiwan | 2022-10-03 | Larval | Larval | Whole Organism | All anatomical structures |