run_metadata: 71390
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71390 | SRR21529724 | SRX17532083 | SRS15080530 | SRP396693 | PRJNA879314 | Transcriptome analysis of WT and cdk1 / zebrafish testis. | PRJNA879314 | Other | Transcriptome analysis of WT and cdk1 / zebrafish testis. To explore the effect of cdk1 deletion on testis development and cell cycle in zebrafish. | Danio rerio | zebrafish | strain:Wild population|age:1|sex:male|tissue:testis|geo loc name:China:Wuhan|BioSampleModel:Model organism or animal | Transcriptome analysis of WT and cdk1 / zebrafish testis | WT and cdk1 / zebrafish testis | WT and cdk1 / zebrafish testis | Total RNAs were extracted from the spermatogonia of experimental fish using Trizol. The construction of the cDNA library and sequencing were performed using Illumina NovaSeq 6000 HiSeq | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP396693 | L1EFK171176--WT_1.R1.raw.fastq.gz L1EFK171176--WT_1.R2.raw.fastq.gz L1EFK171177--WT_2.R1.raw.fastq.gz L1EFK171177--WT_2.R2.raw.fastq.gz L1EFK171178--WT_3.R1.raw.fastq.gz L1EFK171178--WT_3.R2.raw.fastq.gz L1EFK171179--cdk_1.R1.raw.fastq.gz L1EFK171179--cdk_1.R2.raw.fastq.gz L1EFK171180--cdk_2.R1.raw.fastq.gz L1EFK171180--cdk_2.R2.raw.fastq.gz L1EFK171181--cdk_3.R1.raw.fastq.gz L1EFK171181--cdk_3.R2.raw.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 42093812772.0 | 139383486.0 | L1EFK171176 WT 1.R1.raw.fastq.gz | 0:151 1:151 | A:11032877415;C:9928091970;G:10375381857;T:10756803003;N:658527 | 151 | 151 | 11032877415 | 9928091970 | 10375381857 | 10756803003 | 658527 | SRX17532083 | SRS15080530 | SRA1495115 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.93915 | 0.93965 | 0.06748 | 0.06739 | 0.65652 | 0.65537 | 0.49084 | 0.49358 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-09-12 | Undetermined | Undetermined | Gonad | Reproductive System |