run_metadata: 71389
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71389 | SRR21528735 | SRX17531093 | SRS15079603 | SRP396673 | PRJNA879284 | Toxicology evaluation of overdose hydroxychloroquine on zebrafish Danio rerio embryos | PRJNA879284 | Other | HCQ embryos | HCQ embryos | strain:AB|breed:Egg water|age:0.8year|dev stage:5hpf|sex:not applicable|tissue:embryo|cell line:embryo|cell type:embryo|collected by:Straw|BioSampleModel:Model organism or animal | RNA Seq of WT embryo | 1 | 1 | WT embryo | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | SINGLE | ILLUMINA | Illumina HiSeq 4000 | SRP396673 | HCQ-con_1.fq.gz HCQ-con_2.fq.gz | fastq fastq | 6039833100.0 | 20132777.0 | HCQ con 1.fq.gz | 0:150 1:150 | A:1632793916;C:1383182551;G:1413411225;T:1610087974;N:357434 | 150 | 150 | 1632793916 | 1383182551 | 1413411225 | 1610087974 | 357434 | SRX17531093 | SRS15079603 | SRA1495070 | Sichuan University|West China Second University Hospital | Sichuan University | 2 | 0.95216 | 0.95061 | 0.05402 | 0.05357 | 0.75185 | 0.75262 | 0.48712 | 0.48749 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2022-09-12 | Multi-stage | Multi-stage | Embryo Imprecise | All anatomical structures |