run_metadata: 71108
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71108 | SRR21672044 | SRX17670417 | SRS15202578 | SRP398597 | PRJNA874604 | Danio rerio Raw sequence reads | PRJNA874604 | Whole Genome Sequencing | RNA seq data of the whole body of WT leg1a mu leg1b mu and leg1 double MZ mutant upf1 mu upf1;leg1a dm upf3a mu upf3a;leg1a dm at both 3dpf and 5dpf. liver from wt leg1a mu upf3a mu upf3a;leg1a dm at 5dpf were examined using ChIP Seq H3K4me3 | RNA seq WT 5dpf 8 | isolate:61|breed:AB ZFIN ID: ZDB GENO 960809 7|dev stage:5dpf|sex:not collected|tissue:whole body|BioSampleModel:Model organism or animal | RNA seq WT 5dpf 8 | RNA seq WT 5dpf 8 | RNA seq WT 5dpf 8 | common method | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP398597 | 5dpf_AB8_R2.fq.gz 5dpf_AB8_R1.fq.gz | fastq fastq | 6989947500.0 | 23299825.0 | 5dpf AB8 R1.fq.gz | 0:150 1:150 | A:1905173014;C:1595918859;G:1596171802;T:1892598059;N:85766 | 150 | 150 | 1905173014 | 1595918859 | 1596171802 | 1892598059 | 85766 | SRX17670417 | SRS15202578 | SRA1503252 | Zhejiang University|College of Animal Sciences | Zhejiang University | 2 | 0.95243 | 0.95171 | 0.1188 | 0.1184 | 0.65437 | 0.65525 | 0.47605 | 0.47218 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-09-22 | Larval | Larval | Trunk | Surface Structure |