run_metadata: 71055
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71055 | SRR21177745 | SRX17188833 | SRS14757961 | SRP393518 | PRJNA871389 | Danio rerio Transcriptome or Gene expression | PRJNA871389 | Other | normal transcriptome sequencing of Danio rerio | CONQ3 | strain:AB strain|isolate:abnormal|breed:not applicable|cultivar:not applicable|ecotype:not collected|age:9 days|dev stage:larvae|sex:not determined|tissue:total RNA|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | S573 | S573 | normal RNA Seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP393518 | CONQ3_1.fq CONQ3_2.fq | fastq fastq | 6743945100.0 | 22479817.0 | CONQ3 1.fq | 0:150 1:150 | A:1775414763;C:1604473608;G:1604910553;T:1759101737;N:44439 | 150 | 150 | 1775414763 | 1604473608 | 1604910553 | 1759101737 | 44439 | SRX17188833 | SRS14757961 | SRA1481756 | Zhejiang University of Technology|Biological Engineering | Zhejiang University of Technology | 2 | 0.95006 | 0.94952 | 0.08856 | 0.08841 | 0.68339 | 0.68422 | 0.46526 | 0.46762 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-08-23 | Larval | Larval | Undetermined | Undetermined |