run_metadata: 71051
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71051 | SRR21177741 | SRX17188837 | SRS14757965 | SRP393518 | PRJNA871389 | Danio rerio Transcriptome or Gene expression | PRJNA871389 | Other | normal transcriptome sequencing of Danio rerio | M3 | strain:AB strain|isolate:medicine treated|breed:not applicable|cultivar:not applicable|ecotype:not collected|age:13 days|dev stage:larvae|sex:not determined|tissue:total RNA|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | S577 | S577 | normal RNA Seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP393518 | M3_1.fq M3_2.fq | fastq fastq | 6762812700.0 | 22542709.0 | M3 1.fq | 0:150 1:150 | A:1800507274;C:1591193580;G:1592059789;T:1778991859;N:60198 | 150 | 150 | 1800507274 | 1591193580 | 1592059789 | 1778991859 | 60198 | SRX17188837 | SRS14757965 | SRA1481756 | Zhejiang University of Technology|Biological Engineering | Zhejiang University of Technology | 2 | 0.94332 | 0.94689 | 0.0979 | 0.09651 | 0.70354 | 0.70295 | 0.45954 | 0.46322 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-08-23 | Larval | Larval | Undetermined | Undetermined |