run_metadata: 70890
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70890 | SRR20822147 | SRX16841742 | SRS14446937 | SRP389887 | PRJNA865921 | Zebrafish mutant TCR alpha and beta lines | PRJNA865921 | Other | Cas9 generated TCR alpha or beta Zebrafish lines | pubmed:37344590 | CF 1 | strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal | TCRab zebrafish repertoire | CF 23 1 | CF 23 1 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP389887 | CF_1_2ii_1_R1.fastq.gz CF_1_2ii_1_R2.fastq.gz CF_1_2ii_2_R1.fastq.gz CF_1_2ii_2_R2.fastq.gz CF_1_2ii_3_R1.fastq.gz CF_1_2ii_3_R2.fastq.gz CF_1_2ii_4_R1.fastq.gz CF_1_2ii_4_R2.fastq.gz CF_1i_1_R1.fastq.gz CF_1i_1_R2.fastq.gz CF_1i_2_R1.fastq.gz CF_1i_2_R2.fastq.gz CF_1i_3_R1.fastq.gz CF_1i_3_R2.fastq.gz CF_1i_4_R1.fastq.gz CF_1i_4_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 33274200.0 | 55457.0 | CF 1 2ii 1 R1.fastq.gz | 0:300 1:300 | A:9021097;C:7171844;G:6860950;T:10218627;N:1682 | 300 | 300 | 9021097 | 7171844 | 6860950 | 10218627 | 1682 | SRX16841742 | SRS14446937 | SRA1468924 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.06705 | 3e-05 | 0.00012 | 2e-05 | 0.99987 | 1.0 | 0.11281 | 300 | 300 | T | T | mates < 9% mapping rate | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-04 | Adult | Adult | Trunk | Surface Structure |