run_metadata: 70872
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70872 | SRR21025559 | SRX17041804 | SRS14626476 | SRP389887 | PRJNA865921 | Zebrafish mutant TCR alpha and beta lines | PRJNA865921 | Other | Cas9 generated TCR alpha or beta Zebrafish lines | pubmed:37344590 | Ca mutant ZF | ZF A3 | strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Ca mutant fish 3|BioSampleModel:Model organism or animal | TCR Calpha mutant zebrafish repertoire | ZF A3 37 | ZF A3 37 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP389887 | ZF_A_3_R1.fastq.gz ZF_A_3_R2.fastq.gz | fastq fastq | 460708800.0 | 767848.0 | ZF A 3 R1.fastq.gz | 0:300 1:300 | A:128444122;C:96066218;G:93502400;T:122577077;N:20118983 | 300 | 300 | 128444122 | 96066218 | 93502400 | 122577077 | 20118983 | SRX17041804 | SRS14626476 | SRA1474258 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.12334 | 8e-05 | 0.00785 | 5e-05 | 0.99486 | 0.99997 | 0.57556 | 1.0 | 300 | 300 | B | T | mate2 technical by mapping diff | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-12 | Adult | Adult | Trunk | Surface Structure |