run_metadata: 70871
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70871 | SRR21025558 | SRX17041805 | SRS14626477 | SRP389887 | PRJNA865921 | Zebrafish mutant TCR alpha and beta lines | PRJNA865921 | Other | Cas9 generated TCR alpha or beta Zebrafish lines | pubmed:37344590 | Cb mutant ZF | ZF B1 | strain:TLEK|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Cb mutant fish 1|BioSampleModel:Model organism or animal | TCR Cbeta mutant zebrafish repertoire | ZF B1 37 | ZF B1 37 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP389887 | ZF_B_1_R1.fastq.gz ZF_B_1_R2.fastq.gz | fastq fastq | 690565200.0 | 1150942.0 | ZF B 1 R1.fastq.gz | 0:300 1:300 | A:190561034;C:142350146;G:136690824;T:190637972;N:30325224 | 300 | 300 | 190561034 | 142350146 | 136690824 | 190637972 | 30325224 | SRX17041805 | SRS14626477 | SRA1474258 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.11811 | 9e-05 | 0.00424 | 4e-05 | 0.99472 | 0.99995 | 0.43275 | 0.5 | 300 | 300 | B | T | mate2 technical by mapping diff | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-12 | Adult | Adult | Trunk | Surface Structure |