run_metadata: 70857
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70857 | SRR20774919 | SRX16794795 | SRS14416088 | SRP389580 | PRJNA865512 | TCR alpha and beta repseq | PRJNA865512 | Other | TCR Repertoire sequencing raw reads TCR alpha and beta for several species | pubmed:37344590 | ZF 1 | strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal | TCRab zebrafish repertoire | ZF 14 | ZF 14 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP389580 | ZF_1_R1.fastq.gz ZF_1_R2.fastq.gz ZF_2_R1.fastq.gz ZF_2_R2.fastq.gz ZF_3_R1.fastq.gz ZF_3_R2.fastq.gz ZF_4_R1.fastq.gz ZF_4_R2.fastq.gz ZF_5_R1.fastq.gz ZF_5_R2.fastq.gz ZF_6_R1.fastq.gz ZF_6_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 2060446800.0 | 3434078.0 | ZF 1 R1.fastq.gz | 0:300 1:300 | A:583057434;C:430231786;G:436041334;T:600779904;N:10336342 | 300 | 300 | 583057434 | 430231786 | 436041334 | 600779904 | 10336342 | SRX16794795 | SRS14416088 | SRA1467929 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.22937 | 0.00332 | 0.00094 | 0.00296 | 0.99853 | 0.99977 | 0.07993 | 0.34426 | 300 | 300 | B | T | mate2 technical by mapping diff | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-03 | Adult | Adult | Trunk | Surface Structure |