run_metadata: 70856
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70856 | SRR20821019 | SRX16840618 | SRS14416088 | SRP389580 | PRJNA865512 | TCR alpha and beta repseq | PRJNA865512 | Other | TCR Repertoire sequencing raw reads TCR alpha and beta for several species | pubmed:37344590 | ZF 1 | strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal | TCRab zebrafish repertoire | ZF 15 1 | ZF 15 1 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP389580 | Fish_1_s1_R1.fastq.gz Fish_1_s1_R2.fastq.gz Fish_1_s2_R1.fastq.gz Fish_1_s2_R2.fastq.gz Fish_1_s3_R1.fastq.gz Fish_1_s3_R2.fastq.gz Fish_1_s4_R1.fastq.gz Fish_1_s4_R2.fastq.gz Fish_1_s5_R1.fastq.gz Fish_1_s5_R2.fastq.gz Fish_1_s6_R1.fastq.gz Fish_1_s6_R2.fastq.gz Fish_1_s7_R1.fastq.gz Fish_1_s7_R2.fastq.gz Fish_1_s8_R1.fastq.gz Fish_1_s8_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 23425111500.0 | 46850223.0 | Fish 1 s1 R1.fastq.gz | 0:250 1:250 | A:6539165809;C:4856848776;G:4965848496;T:6999397120;N:63851299 | 250 | 250 | 6539165809 | 4856848776 | 4965848496 | 6999397120 | 63851299 | SRX16840618 | SRS14416088 | SRA1468889 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.22816 | 3e-05 | 3e-05 | 2e-05 | 0.99931 | 1.0 | 0.01795 | 250 | 250 | B | T | mate2 technical by mapping diff | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-04 | Adult | Adult | Trunk | Surface Structure |