run_metadata: 70853
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70853 | SRR20821016 | SRX16840621 | SRS14445862 | SRP389580 | PRJNA865512 | TCR alpha and beta repseq | PRJNA865512 | Other | TCR Repertoire sequencing raw reads TCR alpha and beta for several species | pubmed:37344590 | ZF 5 | strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 5|BioSampleModel:Model organism or animal | TCRab zebrafish repertoire | ZF 15 5 | ZF 15 5 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP389580 | Fish_5_s1_R1.fastq.gz Fish_5_s1_R2.fastq.gz Fish_5_s2_R1.fastq.gz Fish_5_s2_R2.fastq.gz Fish_5_s3_R1.fastq.gz Fish_5_s3_R2.fastq.gz Fish_5_s4_R1.fastq.gz Fish_5_s4_R2.fastq.gz Fish_5_s5_R1.fastq.gz Fish_5_s5_R2.fastq.gz Fish_5_s6_R1.fastq.gz Fish_5_s6_R2.fastq.gz Fish_5_s7_R1.fastq.gz Fish_5_s7_R2.fastq.gz Fish_5_s8_R1.fastq.gz Fish_5_s8_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 12404050000.0 | 24808100.0 | Fish 5 s1 R1.fastq.gz | 0:250 1:250 | A:3320455167;C:2599567608;G:2616971343;T:3833147517;N:33908365 | 250 | 250 | 3320455167 | 2599567608 | 2616971343 | 3833147517 | 33908365 | SRX16840621 | SRS14445862 | SRA1468889 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.46656 | 1e-05 | 0.00102 | 0.0 | 0.99715 | 1.0 | 0.67642 | 250 | 250 | B | T | mate2 technical by mapping diff | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-04 | Adult | Adult | Trunk | Surface Structure |