run_metadata: 70852
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70852 | SRR20821269 | SRX16840867 | SRS14416088 | SRP389580 | PRJNA865512 | TCR alpha and beta repseq | PRJNA865512 | Other | TCR Repertoire sequencing raw reads TCR alpha and beta for several species | pubmed:37344590 | ZF 1 | strain:Tuebingen|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:16 month|dev stage:adult|sex:missing|tissue:whole body|replicate:Zebrafish 1|BioSampleModel:Model organism or animal | TCRab zebrafish repertoire | ZF 15 1 | ZF 15 1 | Repertoire amplification from cDNA with C specific primers for TCRa and TCRb | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP389580 | ZF_1_01_R1.fastq.gz ZF_1_01_R2.fastq.gz ZF_1_02_R1.fastq.gz ZF_1_02_R2.fastq.gz ZF_1_03_R1.fastq.gz ZF_1_03_R2.fastq.gz ZF_1_04_R1.fastq.gz ZF_1_04_R2.fastq.gz ZF_1_05_R1.fastq.gz ZF_1_05_R2.fastq.gz ZF_1_06_R1.fastq.gz ZF_1_06_R2.fastq.gz ZF_1_07_R1.fastq.gz ZF_1_07_R2.fastq.gz ZF_1_08_R1.fastq.gz ZF_1_08_R2.fastq.gz ZF_1_09_R1.fastq.gz ZF_1_09_R2.fastq.gz ZF_1_10_R1.fastq.gz ZF_1_10_R2.fastq.gz ZF_1_11_R1.fastq.gz ZF_1_11_R2.fastq.gz ZF_1_12_R1.fastq.gz ZF_1_12_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | 11128555000.0 | 22257110.0 | ZF 1 01 R1.fastq.gz | 0:250 1:250 | A:3130611303;C:2262908040;G:2314518134;T:3418822646;N:1694877 | 250 | 250 | 3130611303 | 2262908040 | 2314518134 | 3418822646 | 1694877 | SRX16840867 | SRS14416088 | SRA1468898 | Max Planck Institut|Boehm | Max Planck Institut | 2 | 0.26276 | 0.0002 | 0.00063 | 0.00019 | 0.99669 | 1.0 | 0.16038 | 250 | 250 | B | T | mate2 technical by mapping diff | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Germany | 2022-08-04 | Adult | Adult | Trunk | Surface Structure |