run_metadata: 70825
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70825 | SRR20681997 | SRX16703836 | SRS14334382 | SRP388498 | PRJNA862491 | Danio rerio Raw sequence reads | PRJNA862491 | Whole Genome Sequencing | Perfluorononanoic acid PFNA with different concentrations were used to check the toxicity effects on zebrafish at the early life stage | PFNA100 1 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:Larvae|dev stage:120 h development|sex:not collected|tissue:Whole fish|replicate:replicate = biological replicate of PFNA100 1|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | S116 | S116 | PFNA treated sample RNA seq | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | BGISEQ | BGISEQ-500 | SRP388498 | PFNA100_1_1.fq.gz PFNA100_1_2.fq.gz | fastq fastq | 6594193500.0 | 43961290.0 | PFNA100 1 1.fq.gz | 0:150 1:150 | A:1821295339;C:1479863090;G:1468906366;T:1824122143;N:6562 | 150 | 150 | 1821295339 | 1479863090 | 1468906366 | 1824122143 | 6562 | SRX16703836 | SRS14334382 | SRA1463952 | Southern University of Science and Technology|Public Health and Emergency Management | Southern University of Science and Technology | 1 | 0.93419 | 0.12923 | 0.70826 | 0.49541 | 150 | B | usable mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-07-28 | Larval | Larval | Whole Organism | All anatomical structures |