run_metadata: 70798
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70798 | SRR20746140 | SRX16766394 | SRS14393160 | SRP389277 | PRJNA859990 | Effects of psychotropic drugs on brain tissue of zebrafish | PRJNA859990 | Other | DMSO 1 | strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal | RNAseq of Danio rerio: control group | DMSO 1 | DMSO 1 | RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 1 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP389277 | DMSO-1_R1.fq.gz DMSO-1_R2.fq.gz | fastq fastq | 16398292390.0 | 109640658.0 | DMSO 1 R1.fq.gz | 0:149.56 1:149.56 | A:4724674961;C:3466158531;G:3459736015;T:4746196552;N:1526331 | 149 | 149 | 4724674961 | 3466158531 | 3459736015 | 4746196552 | 1526331 | SRX16766394 | SRS14393160 | SRA1465945 | Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology | Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences | 1 | 0.86523 | 0.25273 | 0.71474 | 0.50305 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-08-01 | Adult | Adult | Brain | Nervous System |