run_metadata: 70784
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70784 | SRR20746126 | SRX16766408 | SRS14393173 | SRP389277 | PRJNA859990 | Effects of psychotropic drugs on brain tissue of zebrafish | PRJNA859990 | Other | SER 3 | strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal | RNAseq of Danio rerio: SER group | SER 3 | SER 3 | RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 3 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP389277 | SER-3_R1.fq.gz SER-3_R2.fq.gz | fastq fastq | 10839550816.0 | 72273402.0 | SER 3 R1.fq.gz | 0:149.98 1:149.98 | A:3182432825;C:2228831624;G:2233476394;T:3193795182;N:1014791 | 149 | 149 | 3182432825 | 2228831624 | 2233476394 | 3193795182 | 1014791 | SRX16766408 | SRS14393173 | SRA1465945 | Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology | Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences | 1 | 0.85802 | 0.27151 | 0.71492 | 0.49972 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-08-01 | Adult | Adult | Brain | Nervous System |