run_metadata: 70711
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70711 | SRR21457017 | SRX17460716 | SRS15014527 | SRP385641 | PRJNA857143 | Single cell transcriptomic data of zebrafish lbw mutant | PRJNA857143 | Other | Zebrafish lbw mutant exhibits hepatized anterior intestine. To characterize the functional liver cells in lbw intestine we dissected lbw intestine at 6 dpf and carried out scRNA seq to compare its cell population clusters with wild type liver and intestine. | Liver in the WT S4 L001 | isolate:wild type|dev stage:6 dpf|sex:female and male|tissue:liver|aliquot:aliquot 1|BioSampleModel:Model organism or animal | scRNA Seq of zebrafish: 6 dpf wild type liver | Live S4 L001 aliquot 1 | Live S4 L001 aliquot 1 | using Chromium Single Cell three prime GEM v3.1 Reagent Kit | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP385641 | 20200806_S4_Live_20200825NB_S4_L001_I1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L001_R1_001.fastq.gz 20200806_S4_Live_20200825NB_S4_L001_R2_001.fastq.gz | fastq fastq fastq | 15047379303.0 | 80467269.0 | 20200806 S4 Live 20200825NB S4 L001 I1 001.fastq.gz | 0:8 1:28 2:151 | A:3778269770;C:2702450055;G:2724848747;T:2944890394;N:98653 | 8 | 28 | 151 | 3778269770 | 2702450055 | 2724848747 | 2944890394 | 98653 | SRX17460716 | SRS15014527 | SRA1491985 | Southwest University|Institute of Developmental Biology and Regenerativ | Southwest University | 1 | 0.90977 | 0.06799 | 0.87998 | 0.75241 | 151 | B | usable mapping rate | illumina | novaseq_era | unknown | poly_a | unknown | sc | single_cell_droplet | 10x | China | 2022-09-11 | Larval | Larval | Liver | Liver and Biliary System |