run_metadata: 70469
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70469 | SRR19897792 | SRX15940762 | SRS13627788 | SRP384180 | PRJNA854078 | The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group | PRJNA854078 | Other | zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively. | W2 | strain:missing|age:missing|sex:missing|tissue:eye|repulicate:white repulicate 2|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio | W2 | W2 | white light | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP384180 | W2_1.fq.gz W2_2.fq.gz | fastq fastq | 6680260200.0 | 22267534.0 | W2 1.fq.gz | 0:150 1:150 | A:1823317259;C:1515290462;G:1509530485;T:1832110882;N:11112 | 150 | 150 | 1823317259 | 1515290462 | 1509530485 | 1832110882 | 11112 | SRX15940762 | SRS13627788 | SRA1445974 | Zhejiang Ocean University|National Engineering Research Center of Marine Fac | Zhejiang Ocean University | 2 | 0.92292 | 0.92065 | 0.09554 | 0.09545 | 0.67551 | 0.6757 | 0.50849 | 0.51222 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-06-29 | Undetermined | Undetermined | Eye | Sensory System |