run_metadata: 70467
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70467 | SRR19897790 | SRX15940764 | SRS13627790 | SRP384180 | PRJNA854078 | The eyes of Danio rerio RNA seq data from white light group blue light group white light + cold group and blue light + cold group | PRJNA854078 | Other | zebrafish were placed in a white light emitting diode and a blue light emitting diode and 26 degrees centigrade water body. post pretreatment for two weeks fish were then transferred to white light and 11degrees centigrade water respectively. | CB1 | strain:missing|age:missing|sex:missing|tissue:eye|repulicate:cold + blue light repulicate 1|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio | CB1 | CB1 | cold + blue light | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP384180 | CB1_1.fq.gz CB1_2.fq.gz | fastq fastq | 6726735900.0 | 22422453.0 | CB1 1.fq.gz | 0:150 1:150 | A:1854984195;C:1506200798;G:1500739385;T:1864656690;N:154832 | 150 | 150 | 1854984195 | 1506200798 | 1500739385 | 1864656690 | 154832 | SRX15940764 | SRS13627790 | SRA1445974 | Zhejiang Ocean University|National Engineering Research Center of Marine Fac | Zhejiang Ocean University | 2 | 0.92107 | 0.92013 | 0.11091 | 0.11046 | 0.68416 | 0.68369 | 0.52205 | 0.51943 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-06-29 | Undetermined | Undetermined | Eye | Sensory System |