run_metadata: 70366
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70366 | SRR21073879 | SRX17088845 | SRS14371195 | SRP388936 | PRJNA849909 | Danio rerio strain:AB Raw sequence reads | PRJNA849909 | Whole Genome Sequencing | normal ovary of zebrafish | MT 4 | strain:AB|age:8 mpf of bmp4 deficient fish 1|BioSampleModel:Model organism or animal | RNAseq of follicle | s126 | s126 | normal RNA Seq of ovary | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP388936 | loader:fastq load.py | ._MT_4_2.fq MT_4_2.fq | fastq fastq | 1888773150.0 | 12591821.0 | MT4.fq.tar.gz | 0:150 | A:511378286;C:435985420;G:435316617;T:506079213;N:13614 | 150 | 511378286 | 435985420 | 435316617 | 506079213 | 13614 | SRX17088845 | SRS14371195 | SRA1476176 | University of Macau|Faculty of Health Sciences | University of Macau | 1 | 0.94333 | 0.04222 | 0.71478 | 0.50684 | 150 | B | usable mapping rate | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-08-16 | Adult | Adult | Gonad | Reproductive System |