run_metadata: 70324
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70324 | SRR19661784 | SRX15711478 | SRS13405873 | SRP381845 | PRJNA849172 | Danio rerio Raw sequence reads | PRJNA849172 | Other | Liver is an essential organ with multiple biological functions including metabolism detoxification digestion and homeostasis in vertebrates. Zebrafish Danio rerio is an excellent genetic model system to study both processes of liver development and liver regeneration while the molecular mechanism of zebrafish early liver development remain unclear. In this study we performed comparative transcriptome analysis of liver cells which were sorting by flow cytometry in different time points i.e. 60 hpf 72 hpf or 96 hpf. | 60h1 S7 L003 R1 | strain:not collected|isolate:5|age:not collected|dev stage:hatching|sex:not determined|tissue:liver|BioSampleModel:Model organism or animal | 5 | 60h1 S7 L003 R1 | 60h1 S7 L003 R1 | sorting | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina Genome Analyzer IIx | SRP381845 | 60h1_S7_L003_R1_001.fastq.gz 60h1_S7_L003_R2_001.fastq.gz | fastq fastq | 861950674.0 | 3784961.0 | 60h1 S7 L003 R1 001.fastq.gz | 0:113.44 1:114.29 | A:229059608;C:201979412;G:204483606;T:225306157;N:1121891 | 113 | 114 | 229059608 | 201979412 | 204483606 | 225306157 | 1121891 | SRX15711478 | SRS13405873 | SRA1437609 | Institute of Hydrobiology, Chinese Academy of Sciences|Center for Molecular and Cellular Biology of Aquat | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.93591 | 0.93506 | 0.04081 | 0.04127 | 0.83966 | 0.84287 | 0.5149 | 0.51471 | 84 | 84 | B | B | biological fallback assumption | illumina | early_illumina | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-15 | Hatching | Embryo | Liver | Liver and Biliary System |