run_metadata: 70299
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70299 | SRR19667659 | SRX15717079 | SRS13410644 | SRP381981 | PRJNA849009 | Danio rerio strain:AB Raw sequence reads | PRJNA849009 | Whole Genome Sequencing | PG follicles of bmp15 and inha double mutants | bmp15MT5 | strain:AB|age:4 mpf follicles of bmp15 deficient fish 2|BioSampleModel:Model organism or animal | RNAseq of follicle | s115 | s115 | normal RNA Seq of follicles | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP381981 | bmp15MT5_1.fq.gz bmp15MT5_2.fq.gz | fastq fastq | 6803755200.0 | 22679184.0 | bmp15MT5 1.fq.gz | 0:150 1:150 | A:1805035286;C:1608870778;G:1597859189;T:1791709754;N:280193 | 150 | 150 | 1805035286 | 1608870778 | 1597859189 | 1791709754 | 280193 | SRX15717079 | SRS13410644 | SRA1438276 | University of Macau|Faculty of Health Sciences | University of Macau | 2 | 0.93476 | 0.92086 | 0.02132 | 0.02063 | 0.74278 | 0.7441 | 0.49866 | 0.49457 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-16 | Adult | Adult | Gonad | Reproductive System |