run_metadata: 70232
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70232 | SRR19627924 | SRX15678467 | SRS13376470 | SRP379658 | PRJNA848069 | Transcriptome analysis of ZFL cells | PRJNA848069 | Other | the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress | 2 WT normoxia | isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:2 21% O2|BioSampleModel:Model organism or animal | WT normoxia 2 | WT normoxia 2 | WT normoxia 2 | normoxia for 3d | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP379658 | WT_normoxia-2.R1.fastq.gz WT_normoxia-2.R2.fastq.gz | fastq fastq | 6477041700.0 | 21590139.0 | WT normoxia 2.R1.fastq.gz | 0:150 1:150 | A:1689277340;C:1533072440;G:1600344997;T:1654227811;N:119112 | 150 | 150 | 1689277340 | 1533072440 | 1600344997 | 1654227811 | 119112 | SRX15678467 | SRS13376470 | SRA1435736 | SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science | SHANGHAI OCEAN UNIVERSITY | 2 | 0.95025 | 0.9486 | 0.06318 | 0.06262 | 0.75816 | 0.75933 | 0.49794 | 0.50063 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-11 | Undetermined | Undetermined | Liver | Liver and Biliary System |