run_metadata: 70229
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70229 | SRR19627921 | SRX15678470 | SRS13376473 | SRP379658 | PRJNA848069 | Transcriptome analysis of ZFL cells | PRJNA848069 | Other | the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress | 5 WT hypoxia | isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:2 0.1% O2|BioSampleModel:Model organism or animal | WT hypoxia 2 | WT hypoxia 2 | WT hypoxia 2 | hypoxia for 3d | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP379658 | WT_hypoxia-2.R1.fastq.gz WT_hypoxia-2.R2.fastq.gz | fastq fastq | 7296870000.0 | 24322900.0 | WT hypoxia 2.R1.fastq.gz | 0:150 1:150 | A:1872215969;C:1749380281;G:1856930287;T:1818277482;N:65981 | 150 | 150 | 1872215969 | 1749380281 | 1856930287 | 1818277482 | 65981 | SRX15678470 | SRS13376473 | SRA1435736 | SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science | SHANGHAI OCEAN UNIVERSITY | 2 | 0.95541 | 0.95711 | 0.05508 | 0.05529 | 0.77528 | 0.77498 | 0.52698 | 0.52686 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-11 | Undetermined | Undetermined | Liver | Liver and Biliary System |