run_metadata: 70104
This data as json
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| 70104 | SRR19548855 | SRX15600909 | SRS13301859 | SRP378691 | PRJNA846095 | Transcriptomic evolution across bilaterian tissues | GSE205498 | Other | We investigate tissue transcriptomic evolution across bilaterian animals by analyzing RNA seq data from eight different tissues across twenty species. Overall design: Characterization of ancestral and novel tissue gene expression patterns throughout bilaterian evolution. | pubmed:35801824;pubmed:38622362;pubmed:39933573 | RNA seq of adult Danio rerio adipose tissue [Dre Adipose a] | GSM6213744 | source name:Adult adipose tissue|tissue:Adipose|genome build:danRer10|gtf:danRer10 GTF enriched from Ensembl v80 | RNA seq of adult Danio rerio adipose tissue [Dre Adipose a] | Estimated counts and TPMs were computed by Kallisto v0.44.0 Supplementary files format and content: Tab delimited file with length effective length estimated counts and transcript per million TPM for all species protein coding genes in the relative GTF | Adult adipose tissue | Rneasy plus Mini Kit Qiagen polyA selected stranded RNA seq; RNA libraries were prepared for sequencing using standard Illumina protocols | tissue:Adipose|genome build:danRer10|gtf:danRer10 GTF enriched from Ensembl v80 | GSM6213744 | GSM6213744: RNA seq of adult Danio rerio adipose tissue [Dre Adipose a]; Danio rerio; RNA Seq | GSM6213744 r1 | GSM6213744 | 1 | Rneasy plus Mini Kit Qiagen polyA selected stranded RNA seq; RNA libraries were prepared for sequencing using standard Illumina protocols | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP378691 | Dre_Adipose_a_R1-125.fq.gz Dre_Adipose_a_R2-125.fq.gz | fastq fastq | 19085464750.0 | 76341859.0 | GSM6213744 r1 | 0:125 1:125 | A:4736764645;C:4749222175;G:4787002077;T:4805028216;N:7447637 | 125 | 125 | 4736764645 | 4749222175 | 4787002077 | 4805028216 | 7447637 | SRX15600909 | SRS13301859 | SRA1432871 | CRG | CRG | 2 | 0.97251 | 0.97417 | 0.02687 | 0.02652 | 0.72823 | 0.72987 | 0.55308 | 0.53025 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Unknown | 2022-06-05 | Adult | Adult | Adipose Tissue | Adipose Tissue |