run_metadata: 70103
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70103 | SRR19543892 | SRX15595975 | SRS13296989 | SRP378531 | PRJNA846086 | Danio rerio strain:AB Raw sequence reads | PRJNA846086 | Whole Genome Sequencing | Nomal RNA seq of zebrafish | Con1 | strain:AB|age:11hpf|dev stage:5 9 somites|sex:pooled male and female|tissue:embryo|treatment:control|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: embryo | Con1 | Con1 | Normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP378531 | Con1_1.fq.gz Con1_2.fq.gz | fastq fastq | 6795739800.0 | 22652466.0 | Con1 1.fq.gz | 0:150 1:150 | A:1820854131;C:1593155735;G:1582883837;T:1798595392;N:250705 | 150 | 150 | 1820854131 | 1593155735 | 1582883837 | 1798595392 | 250705 | SRX15595975 | SRS13296989 | SRA1431736 | University of Macau|Faculty of Health and Sciences | University of Macau | 2 | 0.95063 | 0.94915 | 0.07901 | 0.07831 | 0.72305 | 0.72336 | 0.4782 | 0.48038 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-06 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |