run_metadata: 70100
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70100 | SRR19543889 | SRX15595978 | SRS13296992 | SRP378531 | PRJNA846086 | Danio rerio strain:AB Raw sequence reads | PRJNA846086 | Whole Genome Sequencing | Nomal RNA seq of zebrafish | BPA1 | strain:AB|age:11hpf|dev stage:5 9 somites|sex:pooled male and female|tissue:embryo|treatment:30μM BPA|replicate:replicate=biological replicate 1|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: embryo | BPA1 | BPA1 | Normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP378531 | BPA1_1.fq.gz BPA1_2.fq.gz | fastq fastq | 6104923800.0 | 20349746.0 | BPA1 1.fq.gz | 0:150 1:150 | A:1619470868;C:1446280371;G:1438807953;T:1600108341;N:256267 | 150 | 150 | 1619470868 | 1446280371 | 1438807953 | 1600108341 | 256267 | SRX15595978 | SRS13296992 | SRA1431736 | University of Macau|Faculty of Health and Sciences | University of Macau | 2 | 0.95425 | 0.95232 | 0.06962 | 0.06897 | 0.72567 | 0.72614 | 0.46747 | 0.47231 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-06-06 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |