run_metadata: 70057
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70057 | SRR19392695 | SRX15447453 | SRS13169844 | SRP376956 | PRJNA842165 | Danio rerio Raw sequence reads | PRJNA842165 | Whole Genome Sequencing | the RNA seq of 45dpf whole fish | whole zebrafish | breed:AB|age:45days|sex:pooled male and female|tissue:whole fish|BioSampleModel:Model organism or animal | RNAseq of zebrafish | mut 2 45dpf | mut 2 45dpf | RNAseq of whole fish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP376956 | 6Hmut_2_R1.fastq.gz 6Hmut_2_R2.fastq.gz | fastq fastq | 6478614532.0 | 21452366.0 | 6Hmut 2 R1.fastq.gz | 0:151 1:151 | A:1722746415;C:1511301958;G:1537581513;T:1706974238;N:10408 | 151 | 151 | 1722746415 | 1511301958 | 1537581513 | 1706974238 | 10408 | SRX15447453 | SRS13169844 | SRA1426081 | Huazhong Agricultural university|Huazhong Agricultural university | Huazhong Agricultural university | 2 | 0.94033 | 0.93884 | 0.0793 | 0.07897 | 0.66979 | 0.67063 | 0.51091 | 0.50721 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-05-25 | Juvenile | Juvenile | Whole Organism | All anatomical structures |