run_metadata: 70056
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70056 | SRR19392694 | SRX15447454 | SRS13169844 | SRP376956 | PRJNA842165 | Danio rerio Raw sequence reads | PRJNA842165 | Whole Genome Sequencing | the RNA seq of 45dpf whole fish | whole zebrafish | breed:AB|age:45days|sex:pooled male and female|tissue:whole fish|BioSampleModel:Model organism or animal | RNAseq of zebrafish | mut 3 45dpf | mut 3 45dpf | RNAseq of whole fish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP376956 | 6Hmut_3_R1.fastq.gz 6Hmut_3_R2.fastq.gz | fastq fastq | 6560549850.0 | 21723675.0 | 6Hmut 3 R1.fastq.gz | 0:151 1:151 | A:1737437159;C:1534810355;G:1561501860;T:1726789854;N:10622 | 151 | 151 | 1737437159 | 1534810355 | 1561501860 | 1726789854 | 10622 | SRX15447454 | SRS13169844 | SRA1426081 | Huazhong Agricultural university|Huazhong Agricultural university | Huazhong Agricultural university | 2 | 0.93435 | 0.93393 | 0.06267 | 0.06345 | 0.65776 | 0.65871 | 0.49762 | 0.49344 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-05-25 | Juvenile | Juvenile | Whole Organism | All anatomical structures |