run_metadata: 69923
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69923 | SRR19182976 | SRX15248100 | SRS12980682 | SRP375042 | PRJNA837558 | Danio rerio Raw sequence reads | PRJNA837558 | Whole Genome Sequencing | normal transcriptome sequencing of Danio rerio | Ni 100uM 1 | strain:not applicable|isolate:100uM Nickel exposure|breed:zebrafish|cultivar:not applicable|ecotype:AB line|age:6 dpf|sex:not determined|tissue:larvae|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal | RNAseq of Danio rerio | S980 | S980 | normal RNA seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP375042 | Ni_100uM_1_1.fq.gz Ni_100uM_1_2.fq.gz | fastq fastq | 6882243600.0 | 22940812.0 | Ni 100uM 1 1.fq.gz | 0:150 1:150 | A:1772333382;C:1679182546;G:1676381144;T:1754273920;N:72608 | 150 | 150 | 1772333382 | 1679182546 | 1676381144 | 1754273920 | 72608 | SRX15248100 | SRS12980682 | SRA1419650 | Lanzhou University|School ofLife Sciences | Lanzhou University | 2 | 0.96183 | 0.9613 | 0.03846 | 0.03796 | 0.66888 | 0.6688 | 0.48512 | 0.50002 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-05-13 | Larval | Larval | Undetermined | Undetermined |