run_metadata: 69609
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69609 | SRR18935960 | SRX15013546 | SRS12762154 | SRP372447 | PRJNA832566 | zebrafish RBC sequencing | PRJNA832566 | Other | profiling the distinct transcriptional identity of RBC from different RBC related mutants. | WT RBC | strain:WT|dev stage:36 hpf|sex:not collected|tissue:RBC|BioSampleModel:Model organism or animal | RNA seq of RBC | L81327 | L81327 | FACS sorted WT RBCs | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP372447 | WT-1_L8_I327.R1.clean.fastq.gz | fastq | 4062851700.0 | 27085678.0 | WT 1 L8 I327.R1.clean.fastq.gz | 0:150 1:0 | A:1028410873;C:1020911876;G:1010215515;T:1002940085;N:373351 | 150 | 0 | 1028410873 | 1020911876 | 1010215515 | 1002940085 | 373351 | SRX15013546 | SRS12762154 | SRA1410774 | Chinese Acamedy of Sciences|Institute of zoology | Chinese Acamedy of Sciences | 1 | 0.94919 | 0.0692 | 0.85567 | 0.70156 | 150 | B | usable mapping rate | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-04-27 | Pharyngula | Embryo | Undetermined | Embryo Imprecise |