run_metadata: 69391
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69391 | SRR18516715 | SRX14647788 | SRS12413213 | SRP366491 | PRJNA821088 | Enhancer calling in early stages | PRJNA821088 | Other | CAGE seq for enhancer calling in early stages for the DANIO CODE project. | DCD007472BS | strain:WT|age:14hpf|dev stage:5 9 somites|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab University of Birmingham|replicate:2|BioSampleModel:Model organism or animal | CAGE seq 5 9 somites Whole cell CAGE | DCD003722SQ | DCD003722SQ | max read length:50 | RNA-Seq | TRANSCRIPTOMIC | CAGE | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP366491 | CAGE-seq_Mueller_lab_0013AS.DCD003722SQ.USERdanio-user.R1.fastq.gz | fastq | 666656256.0 | 13888672.0 | CAGE seq Mueller lab 0013AS.DCD003722SQ.USERdanio user.R1.fastq.gz | 0:48 1:0 | A:149770159;C:178068662;G:177661463;T:161122864;N:33108 | 48 | 0 | 149770159 | 178068662 | 177661463 | 161122864 | 33108 | SRX14647788 | SRS12413213 | SRA1393740 | DANIO-CODE|Department for Biosciences and Nutrition | DANIO-CODE DANIO-CODE | 1 | 0.25511 | 0.02671 | 0.86436 | 0.50531 | 48 | B | usable mapping rate | illumina | hiseq_era | unknown | cage | unknown | bulk | unknown | unknown | Unknown | 2022-03-29 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |