run_metadata: 68994
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68994 | SRR18297395 | SRX14434915 | SRS12255281 | SRP363531 | PRJNA814446 | Danio rerio Raw sequence reads | PRJNA814446 | Whole Genome Sequencing | To study the effect of alcohol treatment on zebrafish liver 120 hpf | Alcohol treated zebrafish liver samples | J3 1 | dev stage:120 hpf treated zebrafish liver samples|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal | RNA seq of zebrafish liver | J3 1 | J3 1 | Alcohol treated zebrafish liver samples | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP363531 | J3_1.fq.gz J3_2.fq.gz | fastq fastq | 8647171800.0 | 28823906.0 | J3 1.fq.gz | 0:150 1:150 | A:2296724414;C:1995187845;G:2043048487;T:2312145518;N:65536 | 150 | 150 | 2296724414 | 1995187845 | 2043048487 | 2312145518 | 65536 | SRX14434915 | SRS12255281 | SRA1383595 | Inner Mongolia University For Nationalities|College of animal science and technology | Inner Mongolia University For Nationalities | 2 | 0.89619 | 0.89798 | 0.0254 | 0.02563 | 0.83153 | 0.83615 | 0.47241 | 0.46832 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-03-11 | Larval | Larval | Liver | Liver and Biliary System |