run_metadata: 68745
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68745 | SRR22018605 | SRX18000432 | SRS15509920 | SRP404142 | PRJNA811714 | Danio rerio Raw sequence reads | PRJNA811714 | Whole Genome Sequencing | To identify IRF2a regulation function. | Model organism or animal sample from Danio rerio fin cells | ZFW cell RNAseq | strain:AB|age:3 month|sex:not collected|tissue:caudal fin|BioSampleModel:Model organism or animal | IRF2aKOSV4 | 16 | 16 | commen method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP404142 | S33ASV4.R1.fq.gz S33ASV4.R2.fq.gz | fastq fastq | 6408391826.0 | 23017729.0 | S33ASV4.R1.fq.gz | 0:139.17 1:139.24 | A:1721886198;C:1475600659;G:1490673401;T:1720218642;N:12926 | 139 | 139 | 1721886198 | 1475600659 | 1490673401 | 1720218642 | 12926 | SRX18000432 | SRS15509920 | SRA1525870 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.89349 | 0.89479 | 0.09581 | 0.09538 | 0.74552 | 0.74487 | 0.50738 | 0.50492 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-24 | Adult | Adult | Fin | Surface Structure |