run_metadata: 68736
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68736 | SRR22018596 | SRX18000441 | SRS15509920 | SRP404142 | PRJNA811714 | Danio rerio Raw sequence reads | PRJNA811714 | Whole Genome Sequencing | To identify IRF2a regulation function. | Model organism or animal sample from Danio rerio fin cells | ZFW cell RNAseq | strain:AB|age:3 month|sex:not collected|tissue:caudal fin|BioSampleModel:Model organism or animal | trim2aKOSV4 | 24 | 24 | commen method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP404142 | S81ASV4.R1.fq.gz S81ASV4.R2.fq.gz | fastq fastq | 6639329108.0 | 23999531.0 | S81ASV4.R1.fq.gz | 0:138.31 1:138.34 | A:1761142366;C:1552002835;G:1566302626;T:1759867702;N:13579 | 138 | 138 | 1761142366 | 1552002835 | 1566302626 | 1759867702 | 13579 | SRX18000441 | SRS15509920 | SRA1525870 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.91838 | 0.91924 | 0.0833 | 0.08297 | 0.74523 | 0.74548 | 0.50611 | 0.50677 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-24 | Adult | Adult | Fin | Surface Structure |