run_metadata: 68718
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68718 | SRR22019116 | SRX18000949 | SRS15509920 | SRP404142 | PRJNA811714 | Danio rerio Raw sequence reads | PRJNA811714 | Whole Genome Sequencing | To identify IRF2a regulation function. | Model organism or animal sample from Danio rerio fin cells | ZFW cell RNAseq | strain:AB|age:3 month|sex:not collected|tissue:caudal fin|BioSampleModel:Model organism or animal | trim2aKOMEM3 | 19 | 19 | commen method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP404142 | loader:fastq load.py | S81AMEM3.R1.fq S81AMEM3.R2.fq | fastq fastq | 6674928535.0 | 24098942.0 | S81AMEM3.R1.fq.gz | 0:138.48 1:138.50 | A:1766932614;C:1563958098;G:1579121944;T:1764902437;N:13442 | 138 | 138 | 1766932614 | 1563958098 | 1579121944 | 1764902437 | 13442 | SRX18000949 | SRS15509920 | SRA1380112 | Shanghai Ocean University|College of Fisheries and Life Science | Shanghai Ocean University | 2 | 0.95114 | 0.95265 | 0.0786 | 0.0783 | 0.75252 | 0.75256 | 0.50073 | 0.50036 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-25 | Adult | Adult | Fin | Surface Structure |