run_metadata: 68552
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68552 | SRR18056678 | SRX14208683 | SRS12030730 | SRP360305 | PRJNA806354 | Danio rerio Raw sequence reads | PRJNA806354 | Whole Genome Sequencing | Danio rerio RNA seq reads | Model organism or animal sample from Danio rerio | sample 001 | breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal | SS3WT2 | 2 | 2 | commen method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP360305 | SS3WT2.R1.fq.gz SS3WT2.R2.fq.gz | fastq fastq | 6674317073.0 | 23265242.0 | SS3WT2.R1.fq.gz | 0:143.52 1:143.36 | A:1768071045;C:1560492667;G:1576548690;T:1769161220;N:43451 | 143 | 143 | 1768071045 | 1560492667 | 1576548690 | 1769161220 | 43451 | SRX14208683 | SRS12030730 | SRA1373545 | Shanghai Ocean University|College of Fisheries and life | Shanghai Ocean University | 2 | 0.94677 | 0.9473 | 0.08956 | 0.08902 | 0.66559 | 0.66557 | 0.48058 | 0.48136 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-02-22 | Juvenile | Juvenile | Undetermined | Undetermined |