run_metadata: 68549
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68549 | SRR18056675 | SRX14208686 | SRS12030730 | SRP360305 | PRJNA806354 | Danio rerio Raw sequence reads | PRJNA806354 | Whole Genome Sequencing | Danio rerio RNA seq reads | Model organism or animal sample from Danio rerio | sample 001 | breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal | SS3WT5 | 5 | 5 | commen method | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP360305 | SS3WT5.R1.fq.gz SS3WT5.R2.fq.gz | fastq fastq | 7159028081.0 | 25133913.0 | SS3WT5.R1.fq.gz | 0:142.50 1:142.33 | A:1905921436;C:1664337487;G:1683294939;T:1905427825;N:46394 | 142 | 142 | 1905921436 | 1664337487 | 1683294939 | 1905427825 | 46394 | SRX14208686 | SRS12030730 | SRA1373545 | Shanghai Ocean University|College of Fisheries and life | Shanghai Ocean University | 2 | 0.94917 | 0.95027 | 0.09384 | 0.09347 | 0.6594 | 0.65894 | 0.49218 | 0.49202 | 122 | 122 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-02-22 | Juvenile | Juvenile | Undetermined | Undetermined |