run_metadata: 68492
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68492 | SRR17831294 | SRX13992403 | SRS11831862 | SRP357482 | PRJNA802059 | Danio rerio Transcriptome or Gene expression | PRJNA802059 | Transcriptome Analysis | Danio rerio Transcriptome | con1 | con1 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:wild type|ecotype:not applicable|age:48hpf|dev stage:hatching period|sex:pooled male and female|tissue:trunk|birth date:2021/7/9|birth location:Fudan University in Shanghai|BioSampleModel:Model organism or animal | con | 001 | 001 | In this experiment the two terminal sequencing mode of Illumina hiseq sequencing platform is used to conduct high throughput sequencing on multiple samples. According to the distribution characteristics that the low quality fraction of Illumina sequencing data is concentrated at the end the connector sequence fragments and low quality fragments are dynamically removed from the 3 'end of the sequencing data by skewer software and the quality control analysis and statistical Q20 of the preprocessed data are carried out by fastqc software Base ratio of q30. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP357482 | con1_20210731NA_GGTCCAGA_AAGAACCG_S149_L003_R1_001.fastq.gz con1_20210731NA_GGTCCAGA_AAGAACCG_S149_L003_R2_001.fastq.gz | fastq fastq | 8633935682.0 | 28589191.0 | con1 20210731NA GGTCCAGA AAGAACCG S149 L003 R1 001.fastq.gz | 0:151 1:151 | A:1966868281;C:1479700016;G:3409655197;T:1777370017;N:342171 | 151 | 151 | 1966868281 | 1479700016 | 3409655197 | 1777370017 | 342171 | SRX13992403 | SRS11831862 | SRA1364324 | Affiliated Eye and ENT Hospital of Fudan University|otorhinolaryngology | Affiliated Eye and ENT Hospital of Fudan University | 2 | 0.92358 | 0.75525 | 0.10903 | 0.08537 | 0.73874 | 0.74174 | 0.4644 | 0.47618 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-01-31 | Hatching | Embryo | Trunk | Surface Structure |