run_metadata: 68478
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68478 | SRR17793197 | SRX13955356 | SRS11795771 | SRP357103 | PRJNA801348 | Global studies of Nur77 on metabolism of zebrafish | PRJNA801348 | Other | We created a global Nur77 knockout zebrafish model by CRISPR/Cas9 technique and then performed the whole organism RNA sequencing analysis in wild type and nur77 deficient zebrafish to dissect the changes genes in metabolic related pathways. | nur77KO1 | strain:nur77KO replicate 1|age:6 dpf|sex:male and female|tissue:Total|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 6 dpf larvea | Li lab Nur77 1 | Li lab Nur77 1 | There are two groups: WT and Nur77 mutant. Every group has three replicates. | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | BGISEQ | BGISEQ-500 | SRP357103 | Nur771.fq.gz | fastq | 1075810450.0 | 21516209.0 | Nur771.fq.gz | 0:50 1:0 | A:287851992;C:241486200;G:251500529;T:294560911;N:410818 | 50 | 0 | 287851992 | 241486200 | 251500529 | 294560911 | 410818 | SRX13955356 | SRS11795771 | SRA1363249 | Xiamen University|School of pharmaceutical sciences | Xiamen University | 1 | 0.94193 | 0.11554 | 0.6676 | 0.49728 | 50 | B | usable mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-01-27 | Larval | Larval | Undetermined | Undetermined |