run_metadata: 68477
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68477 | SRR17793196 | SRX13955357 | SRS11795772 | SRP357103 | PRJNA801348 | Global studies of Nur77 on metabolism of zebrafish | PRJNA801348 | Other | We created a global Nur77 knockout zebrafish model by CRISPR/Cas9 technique and then performed the whole organism RNA sequencing analysis in wild type and nur77 deficient zebrafish to dissect the changes genes in metabolic related pathways. | nur77KO2 | strain:nur77KO replicate 2|age:6 dpf|sex:male and female|tissue:Total|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 6 dpf larvea | Li lab Nur77 2 | Li lab Nur77 2 | There are two groups: WT and Nur77 mutant. Every group has three replicates. | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | BGISEQ | BGISEQ-500 | SRP357103 | Nur772.fq.gz | fastq | 1075868050.0 | 21517361.0 | Nur772.fq.gz | 0:50 1:0 | A:288260097;C:241294246;G:250714084;T:295165628;N:433995 | 50 | 0 | 288260097 | 241294246 | 250714084 | 295165628 | 433995 | SRX13955357 | SRS11795772 | SRA1363249 | Xiamen University|School of pharmaceutical sciences | Xiamen University | 1 | 0.94112 | 0.11813 | 0.66582 | 0.48643 | 50 | B | usable mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-01-27 | Larval | Larval | Undetermined | Undetermined |