run_metadata: 68475
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68475 | SRR17793194 | SRX13955359 | SRS11795774 | SRP357103 | PRJNA801348 | Global studies of Nur77 on metabolism of zebrafish | PRJNA801348 | Other | We created a global Nur77 knockout zebrafish model by CRISPR/Cas9 technique and then performed the whole organism RNA sequencing analysis in wild type and nur77 deficient zebrafish to dissect the changes genes in metabolic related pathways. | WT1 | strain:WT replicate 1|age:6 dpf|sex:male and female|tissue:Total|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 6 dpf larvea | Li lab Nur77 4 | Li lab Nur77 4 | There are two groups: WT and Nur77 mutant. Every group has three replicates. | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | BGISEQ | BGISEQ-500 | SRP357103 | WT1.fq.gz | fastq | 1076191400.0 | 21523828.0 | WT1.fq.gz | 0:50 1:0 | A:291276889;C:238480546;G:249179972;T:296814696;N:439297 | 50 | 0 | 291276889 | 238480546 | 249179972 | 296814696 | 439297 | SRX13955359 | SRS11795774 | SRA1363249 | Xiamen University|School of pharmaceutical sciences | Xiamen University | 1 | 0.93825 | 0.12843 | 0.66119 | 0.49668 | 50 | B | usable mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-01-27 | Larval | Larval | Undetermined | Undetermined |