run_metadata: 68474
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68474 | SRR17793193 | SRX13955360 | SRS11795775 | SRP357103 | PRJNA801348 | Global studies of Nur77 on metabolism of zebrafish | PRJNA801348 | Other | We created a global Nur77 knockout zebrafish model by CRISPR/Cas9 technique and then performed the whole organism RNA sequencing analysis in wild type and nur77 deficient zebrafish to dissect the changes genes in metabolic related pathways. | WT2 | strain:WT replicate 2|age:6 dpf|sex:male and female|tissue:Total|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 6 dpf larvea | Li lab Nur77 5 | Li lab Nur77 5 | There are two groups: WT and Nur77 mutant. Every group has three replicates. | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | BGISEQ | BGISEQ-500 | SRP357103 | WT2.fq.gz | fastq | 1076181450.0 | 21523629.0 | WT2.fq.gz | 0:50 1:0 | A:289932885;C:238687076;G:249724577;T:297412345;N:424567 | 50 | 0 | 289932885 | 238687076 | 249724577 | 297412345 | 424567 | SRX13955360 | SRS11795775 | SRA1363249 | Xiamen University|School of pharmaceutical sciences | Xiamen University | 1 | 0.93932 | 0.1297 | 0.66038 | 0.48203 | 50 | B | usable mapping rate | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | China | 2022-01-27 | Larval | Larval | Undetermined | Undetermined |