run_metadata: 68211
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68211 | SRR17658928 | SRX13826954 | SRS11706199 | SRP355728 | PRJNA798522 | Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish | PRJNA798522 | Other | Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity | Z1LM duplication 2 | Zincone2 liver male 2 | strain:AB|dev stage:adult5|sex:male|tissue:liver5|BioSampleModel:Model organism or animal | Z1LM duplication 2 | Zincone2 liver male 2 | Zincone2 liver male 2 | Zincone2 liver male 2 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP355728 | Z1LM2_1.fq Z1LM2_2.fq | fastq fastq | 6509324700.0 | 21697749.0 | Z1LM2 1.fq.gz | 0:150 1:150 | A:1745461645;C:1518249267;G:1510755337;T:1734046233;N:812218 | 150 | 150 | 1745461645 | 1518249267 | 1510755337 | 1734046233 | 812218 | SRX13826954 | SRS11706199 | SRA1358625 | Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center | Chinese Academy of Fishery Sciences | 2 | 0.93476 | 0.93434 | 0.05409 | 0.05354 | 0.79957 | 0.79951 | 0.55566 | 0.52228 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | bulk | bulk | China | 2022-01-21 | Adult | Adult | Liver | Liver and Biliary System |