run_metadata: 68209
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68209 | SRR17658926 | SRX13826956 | SRS11706201 | SRP355728 | PRJNA798522 | Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish | PRJNA798522 | Other | Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity | CLM duplication 3 | Ctrl3 liver male 3 | strain:AB|dev stage:adult3|sex:male|tissue:liver3|BioSampleModel:Model organism or animal | CLM duplication 3 | Ctrl3 liver male 3 | Ctrl3 liver male 3 | Ctrl3 liver male 3 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP355728 | CLM3_2.fq CLM3_1.fq | fastq fastq | 6606443100.0 | 22021477.0 | CLM3 1.fq.gz | 0:150 1:150 | A:1777279847;C:1534028478;G:1528635294;T:1765666817;N:832664 | 150 | 150 | 1777279847 | 1534028478 | 1528635294 | 1765666817 | 832664 | SRX13826956 | SRS11706201 | SRA1358625 | Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center | Chinese Academy of Fishery Sciences | 2 | 0.93213 | 0.93163 | 0.06107 | 0.06084 | 0.75666 | 0.75603 | 0.54196 | 0.54443 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | bulk | bulk | China | 2022-01-21 | Adult | Adult | Liver | Liver and Biliary System |