run_metadata: 68208
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68208 | SRR17658925 | SRX13826957 | SRS11706202 | SRP355728 | PRJNA798522 | Bulk RNA Seq Reveals Toxicity effects of Zinc in the liver of zebra fish | PRJNA798522 | Other | Our results showed environment related zinc contamination could change zebrafish nature behaviors and exhibit heterogeneous toxicity | Z15LF duplication 3 | Zincfifteen3 liver female 3 | strain:AB|dev stage:adult18|sex:female|tissue:liver18|BioSampleModel:Model organism or animal | Z15LF duplication 3 | Zincfifteen3 liver female 3 | Zincfifteen3 liver female 3 | Zincfifteen3 liver female 3 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP355728 | Z15LF3_1.fq.gz Z15LF3_2.fq.gz | fastq fastq | 6888482100.0 | 22961607.0 | Z15LF3 1.fq.gz | 0:150 1:150 | A:1827448725;C:1620084791;G:1622301074;T:1817887819;N:759691 | 150 | 150 | 1827448725 | 1620084791 | 1622301074 | 1817887819 | 759691 | SRX13826957 | SRS11706202 | SRA1358625 | Chinese Academy of Fishery Sciences|Freshwater Fisheries Research Center | Chinese Academy of Fishery Sciences | 2 | 0.96506 | 0.96439 | 0.01655 | 0.0167 | 0.87271 | 0.87249 | 0.16667 | 0.16564 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | bulk | bulk | China | 2022-01-19 | Adult | Adult | Liver | Liver and Biliary System |